Replicability in gene network analysis

Networks

Networks are constructed based upon (i.) protein-protein interactions, (ii.) semantic similarity, and (iii.) co-expression. The co-expression networks are very dense. Please contact us if you are interested in the complete network (threshold is used to reduce the connectivity).

Protein-protein interaction

BioGRID: network and robustness analysis: updated network

HIPPIE: network

IntAct: network and robustness analysis: updated network

I2D: network and robustness analysis: updated network

GeneMANIA: network and robustness analysis: updated network

Semantic similarity

KEGG: network

Reactome: network and robustness analysis: updated network

Phenocarta: network and robustness analysis: updated network

InterPro: network and robustness analysis: updated network

Pfam: network and robustness analysis: updated network

Co-expression

Microarray aggregate A: network

Microarray aggregate B: network

RNA Seq aggregate A: network

RNA Seq aggregate B: network

GO annotation

Annotations